MicrobeTrace
MicrobeTrace is a web-based tool to visually render networks from surveillance, epidemiologic
investigations, and genetic analyses. Using simple point-and-click interfaces, data can
be readily imported, integrated and visualized...no coding required!
Topics
Details
- License:
- Freeware
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- web application, workflow
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript
- Added:
- 6/8/2020
- Last Updated:
- 6/16/2020
Operations
- Aggregation
- Dot plot plotting
- Functional clustering
- Image annotation
- Incident curve plotting
- Network visualisation
- Pairwise sequence alignment
- Phylogenetic tree annotation
- Phylogenetic tree construction (from molecular sequences)
- Phylogenetic tree visualisation
- Scatter plot plotting
- Sequence distance matrix generation
Documentation
User manual
https://github.com/CDCgov/MicrobeTrace/blob/master/docs/MicrobeTrace_Manual.pdfMicrobeTrace user manual
Downloads
- Otherhttps://github.com/CDCgov/MicrobeTrace/blob/master/docs/MicrobeTrace%20Flyer.pdfMicrobeTrace flyer
- Otherhttps://github.com/CDCgov/MicrobeTrace/blob/master/docs/MicrobeTrace_Manual.pdfMicrobeTrace manual
- Test datahttps://github.com/CDCgov/MicrobeTrace/blob/master/demo/MicrobetraceDemoData.zipExample data
Links
Repository
https://github.com/cdcgov/microbetraceIssue tracker
https://github.com/cdcgov/microbetrace/issues