microManager

microManager controls automated microscopes and coordinates image acquisition for experiments requiring time-lapse, multi-channel, and z-stack imaging.


Key Features:

  • Compatibility: Supports integration with microscopes from Leica, Nikon, Olympus, and Zeiss, and with scientific-grade cameras and peripherals such as stages, filter wheels, and shutters.
  • Image Acquisition Strategies: Enables time-lapse imaging, multi-channel imaging, z-stacks, and combinations thereof for customizable acquisition protocols.

Scientific Applications:

  • High-throughput imaging: Facilitates large-scale image acquisition workflows that require coordinated control of microscopy hardware.
  • Live-cell imaging: Provides precise temporal control for repeated imaging of living cells over time.
  • Developmental biology: Supports spatiotemporal imaging of specimens requiring detailed temporal and spatial resolution.

Methodology:

No computational methods or processing pipelines are specified in the provided description.

Topics

Details

Tool Type:
plugin
Operating Systems:
Linux, Windows, Mac
Programming Languages:
MATLAB, C++, Python
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Edelstein A, Amodaj N, Hoover K, Vale R, Stuurman N. Computer Control of Microscopes Using µManager. Current Protocols in Molecular Biology. 2010;92(1). doi:10.1002/0471142727.mb1420s92. PMID:20890901. PMCID:PMC3065365.

Documentation

Links