MiMIR
MiMIR projects pre-trained metabolomics-based models and imputes clinical and disease risk from 1H-NMR metabolomics data generated by Nightingale Health to enable interpretation of metabolic profiles in large epidemiological studies.
Key Features:
- Pre-trained Metabolomics-based Models: Includes 24 pre-trained models that can be projected and calibrated onto new datasets for estimation of disease risk and clinical risk factors.
- Model Projection and Calibration: Supports projection of existing risk models onto 1H-NMR datasets and calibration of model outputs to the target data.
- 1H-NMR Nightingale Health Data Support: Processes and analyzes 1H-NMR metabolomics data specifically from Nightingale Health assays.
- Statistical Analysis of Metabolic Data: Provides statistical analysis functionality for inspection and interpretation of metabolic profiles.
- Standardized Metabolic Profiling for Large Studies: Facilitates standardized, cost-effective metabolic profiling using 1H-NMR suitable for large-scale epidemiological studies.
Scientific Applications:
- Risk Imputation and Prediction: Imputes clinical and disease risk factors from 1H-NMR metabolic profiles using pre-trained models.
- Biomarker Exploration: Projects established risk models onto new cohorts to explore metabolic biomarkers associated with diseases and clinical endpoints.
- Population-scale Metabolic Profiling: Enables standardized metabolic profiling and cross-cohort comparisons in large epidemiological studies using Nightingale Health data.
- Model Transferability Assessment: Assesses and calibrates pre-trained metabolomics model performance when applied to novel datasets.
Methodology:
Projection of 24 pre-trained metabolomics-based models onto 1H-NMR datasets, calibration of model outputs, and statistical analysis of 1H-NMR metabolomics data from Nightingale Health for inspection and interpretation.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 9/5/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Bizzarri D, Reinders MJT, Beekman M, Slagboom PE, van den Akker EB. MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health’s 1H-NMR metabolomics data. Bioinformatics. 2022;38(15):3847-3849. doi:10.1093/bioinformatics/btac388. PMID:35695757. PMCID:PMC9344846.