MIMML

MIMML applies meta-learning and mutual information maximization to predict peptide bioactivities from few-sample training data.


Key Features:

  • Meta-Learning Approach: Implements a meta-learning strategy to enable effective learning from limited experimentally validated peptide data.
  • Mutual Information Maximization: Maximizes mutual information to capture and utilize discriminative information across different peptide functions.
  • Few-Sample Learning Capability: Performs few-sample learning to predict peptide bioactivities using small datasets and outperforms state-of-the-art methods.
  • Deciphering Latent Relationships: Characterizes latent relationships among various peptide functions to elucidate how the meta-model enhances specific tasks.

Scientific Applications:

  • Predicting Peptide Bioactivities: Predicts diverse peptide bioactivities across multiple functions from minimal labeled examples.
  • Functional Peptide Discovery: Identifies discriminative features and latent relationships to support discovery of new functional peptides.
  • Drug and Therapeutic Development: Accelerates early-stage identification of peptide candidates relevant to drug development and therapeutic interventions.

Methodology:

Trains a meta-learning model on few samples from various functional peptides and optimizes mutual information to extract discriminative features that define different peptide functions.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
5/21/2022
Last Updated:
5/21/2022

Operations

Publications

He W, Jiang Y, Jin J, Li Z, Zhao J, Manavalan B, Su R, Gao X, Wei L. Accelerating bioactive peptide discovery via mutual information-based meta-learning. Briefings in Bioinformatics. 2021;23(1). doi:10.1093/bib/bbab499. PMID:34882225.

PMID: 34882225
Funding: - Natural Science Foundation of China: 62071278, 62072329 - King Abdullah University of Science and Technology: FCC/1/1976-04-01, REI/1/0018-01-01, REI/1/4473-01-01, REI/1/4742-01-01, URF/1/4098-01-01