MIMML
MIMML applies meta-learning and mutual information maximization to predict peptide bioactivities from few-sample training data.
Key Features:
- Meta-Learning Approach: Implements a meta-learning strategy to enable effective learning from limited experimentally validated peptide data.
- Mutual Information Maximization: Maximizes mutual information to capture and utilize discriminative information across different peptide functions.
- Few-Sample Learning Capability: Performs few-sample learning to predict peptide bioactivities using small datasets and outperforms state-of-the-art methods.
- Deciphering Latent Relationships: Characterizes latent relationships among various peptide functions to elucidate how the meta-model enhances specific tasks.
Scientific Applications:
- Predicting Peptide Bioactivities: Predicts diverse peptide bioactivities across multiple functions from minimal labeled examples.
- Functional Peptide Discovery: Identifies discriminative features and latent relationships to support discovery of new functional peptides.
- Drug and Therapeutic Development: Accelerates early-stage identification of peptide candidates relevant to drug development and therapeutic interventions.
Methodology:
Trains a meta-learning model on few samples from various functional peptides and optimizes mutual information to extract discriminative features that define different peptide functions.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 5/21/2022
- Last Updated:
- 5/21/2022
Operations
Publications
He W, Jiang Y, Jin J, Li Z, Zhao J, Manavalan B, Su R, Gao X, Wei L. Accelerating bioactive peptide discovery via mutual information-based meta-learning. Briefings in Bioinformatics. 2021;23(1). doi:10.1093/bib/bbab499. PMID:34882225.
DOI: 10.1093/BIB/BBAB499
PMID: 34882225
Funding: - Natural Science Foundation of China: 62071278, 62072329
- King Abdullah University of Science and Technology: FCC/1/1976-04-01, REI/1/0018-01-01, REI/1/4473-01-01, REI/1/4742-01-01, URF/1/4098-01-01