MinoTour
MinoTour performs real-time automated analysis of Oxford Nanopore sequencing data to map and classify reads and to monitor sequencing metrics for rapid biological interpretation.
Key Features:
- Real-Time Data Analysis: Performs automated mapping and classification of sequence reads as they are generated.
- Continuous Monitoring: Provides real-time sequencing metrics to monitor progress and read quality continuously.
- Integration with Nanopore Technology: Integrates with Oxford Nanopore sequencers to analyze nanopore-generated reads in real time.
- Real-time Analysis Framework: Operates a framework that conducts analysis concurrently with sequencing runs.
Scientific Applications:
- Time-sensitive Research: Delivers rapid analytical results for research settings requiring quick biological insights.
- Pathogen Detection: Enables rapid detection and identification of pathogens from nanopore sequencing data.
- Genomic Variant Analysis: Supports mapping and classification workflows applicable to genomic variant analysis from nanopore reads.
- Environmental DNA Studies: Facilitates real-time monitoring and analysis of environmental DNA (eDNA) sequencing data.
Methodology:
Integrates automated analysis processes that operate concurrently with sequencing runs to perform real-time mapping, classification, and provision of sequencing metrics.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool, web application
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- Python, JavaScript, C++
- Added:
- 2/16/2022
- Last Updated:
- 2/16/2022
Operations
Publications
Munro R, Santos R, Payne A, Forey T, Osei S, Holmes N, Loose M. minoTour, real-time monitoring and analysis for nanopore sequencers. Bioinformatics. 2021;38(4):1133-1135. doi:10.1093/bioinformatics/btab780. PMID:34791062. PMCID:PMC8796371.
PMID: 34791062
PMCID: PMC8796371
Funding: - BBSRC: BB/M020061/1
- Defence Science and Technology Laboratory: DSTLX-1000138444
Downloads
- Container filehttps://hub.docker.com/r/adoni5/