miodin

miodin integrates multi-omics data to enable analysis across transcriptomics, genomics, and proteomics for exploring molecular mechanisms in health and disease.


Key Features:

  • Vertical Integration: Analysis across experiments conducted on the same samples to integrate multiple omic layers.
  • Horizontal Integration: Analysis across studies focusing on the same variables to combine datasets from different experiments.
  • Supported Omics Modalities: Supports integration of transcriptomics, genomics, and proteomics datasets.
  • Workflow-based Syntax: Provides a workflow-based syntax for constructing analysis pipelines including data import and processing.
  • Transparency in Data Analysis: Workflows record and expose analysis steps to promote transparency.

Scientific Applications:

  • Integrative omics analysis: Combines heterogeneous omic layers to uncover complex biological insights.
  • Comparative studies: Enables comparative analyses across different experimental conditions.
  • Cross-study biomarker and pathway analysis: Facilitates cross-study analyses focusing on specific biomarkers or pathways.

Methodology:

Implements workflow-based data import, processing, and integration to perform vertical and horizontal multi-omics analyses.

Topics

Details

License:
GPL-3.0
Tool Type:
library
Programming Languages:
R
Added:
1/14/2020
Last Updated:
12/29/2020

Operations

Publications

Ulfenborg B. Vertical and horizontal integration of multi-omics data with miodin. BMC Bioinformatics. 2019;20(1). doi:10.1186/s12859-019-3224-4. PMID:31823712. PMCID:PMC6902525.

PMID: 31823712
PMCID: PMC6902525
Funding: - Stiftelsen för Kunskaps- och Kompetensutveckling: 20160293, 20170302