miodin
miodin integrates multi-omics data to enable analysis across transcriptomics, genomics, and proteomics for exploring molecular mechanisms in health and disease.
Key Features:
- Vertical Integration: Analysis across experiments conducted on the same samples to integrate multiple omic layers.
- Horizontal Integration: Analysis across studies focusing on the same variables to combine datasets from different experiments.
- Supported Omics Modalities: Supports integration of transcriptomics, genomics, and proteomics datasets.
- Workflow-based Syntax: Provides a workflow-based syntax for constructing analysis pipelines including data import and processing.
- Transparency in Data Analysis: Workflows record and expose analysis steps to promote transparency.
Scientific Applications:
- Integrative omics analysis: Combines heterogeneous omic layers to uncover complex biological insights.
- Comparative studies: Enables comparative analyses across different experimental conditions.
- Cross-study biomarker and pathway analysis: Facilitates cross-study analyses focusing on specific biomarkers or pathways.
Methodology:
Implements workflow-based data import, processing, and integration to perform vertical and horizontal multi-omics analyses.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 1/14/2020
- Last Updated:
- 12/29/2020
Operations
Publications
Ulfenborg B. Vertical and horizontal integration of multi-omics data with miodin. BMC Bioinformatics. 2019;20(1). doi:10.1186/s12859-019-3224-4. PMID:31823712. PMCID:PMC6902525.
PMID: 31823712
PMCID: PMC6902525
Funding: - Stiftelsen för Kunskaps- och Kompetensutveckling: 20160293, 20170302