MESBL GC-MS metabolite peak database

MESBL GC-MS metabolite peak database provides a curated library of over 900 standardized GC-MS metabolite peaks with integrated reference annotations from in-house standard compounds, the GOLM database, and the Human Metabolome Database (HMDB) to support metabolite identification in GC-MS metabolomics.


Key Features:

  • Standardized Data Normalization: Implements normalization methods tailored for GC-MS metabolomic analysis to ensure consistent data interpretation.
  • Integrated Peak Library: Contains a comprehensive library of over 900 standardized metabolite peaks aggregated from in-house standards, GOLM, and HMDB.
  • Unknown Peak Identification: Provides methods for identification of unidentified compound peaks in GC-MS datasets.
  • Metabolic Network Analysis: Supports incorporation of metabolic network analysis into data interpretation to relate peaks to biological pathways.
  • Secure Data Repository: Includes a repository for storage of metabolomics data and associated biological sample information.

Scientific Applications:

  • Disease Research: Enables metabolite identification and comparison for studies investigating metabolic alterations in disease states.
  • Systems Biology: Facilitates integration of GC-MS metabolite profiles with pathway and network analyses to study system-level responses.
  • Metabolic Engineering: Supports identification of pathway intermediates and metabolic changes in engineered organisms.
  • Large-scale GC-MS Studies: Serves as a reference resource for high-throughput GC-MS experiments requiring standardized peak annotation.

Methodology:

Integration of in-house standard compounds with the GOLM database and HMDB into a peak library, application of standardized GC-MS normalization methods, methods for unknown peak identification, and inclusion of metabolic network analysis.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
9/11/2017
Last Updated:
7/26/2019

Operations

Publications

Maga-Nteve C, Klapa MI. Streamlining GC-MS metabolomic analysis using the M-IOLITE software suite. IFAC-PapersOnLine. 2016;49(26):286-288. doi:10.1016/j.ifacol.2016.12.140.

Documentation

General
http://miolite2.iceht.forth.gr
The website provides information about citing the respective tool and how to contact the developer for obtaining the database.

Downloads

  • Downloads page
    Version: 1.0
    http://miolite2.iceht.forth.gr
    List is incorporated in the M-IOLITE software but can also be obtained as a separate file upon request.

Links

Other
http://miolite2.iceht.forth.gr
(The download website)

Related Tools

m-iolite
Relation: usedBy