MESBL GC-MS metabolite peak database
MESBL GC-MS metabolite peak database provides a curated library of over 900 standardized GC-MS metabolite peaks with integrated reference annotations from in-house standard compounds, the GOLM database, and the Human Metabolome Database (HMDB) to support metabolite identification in GC-MS metabolomics.
Key Features:
- Standardized Data Normalization: Implements normalization methods tailored for GC-MS metabolomic analysis to ensure consistent data interpretation.
- Integrated Peak Library: Contains a comprehensive library of over 900 standardized metabolite peaks aggregated from in-house standards, GOLM, and HMDB.
- Unknown Peak Identification: Provides methods for identification of unidentified compound peaks in GC-MS datasets.
- Metabolic Network Analysis: Supports incorporation of metabolic network analysis into data interpretation to relate peaks to biological pathways.
- Secure Data Repository: Includes a repository for storage of metabolomics data and associated biological sample information.
Scientific Applications:
- Disease Research: Enables metabolite identification and comparison for studies investigating metabolic alterations in disease states.
- Systems Biology: Facilitates integration of GC-MS metabolite profiles with pathway and network analyses to study system-level responses.
- Metabolic Engineering: Supports identification of pathway intermediates and metabolic changes in engineered organisms.
- Large-scale GC-MS Studies: Serves as a reference resource for high-throughput GC-MS experiments requiring standardized peak annotation.
Methodology:
Integration of in-house standard compounds with the GOLM database and HMDB into a peak library, application of standardized GC-MS normalization methods, methods for unknown peak identification, and inclusion of metabolic network analysis.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 9/11/2017
- Last Updated:
- 7/26/2019
Operations
Publications
Maga-Nteve C, Klapa MI. Streamlining GC-MS metabolomic analysis using the M-IOLITE software suite. IFAC-PapersOnLine. 2016;49(26):286-288. doi:10.1016/j.ifacol.2016.12.140.
Documentation
Downloads
- Downloads pageVersion: 1.0http://miolite2.iceht.forth.grList is incorporated in the M-IOLITE software but can also be obtained as a separate file upon request.