MLHO

MLHO predicts patient-level risks of adverse COVID-19 outcomes, including hospitalization, ICU admission, mechanical ventilation, and mortality, by combining iterative sequential representation mining with feature and model selection.


Key Features:

  • Iterative Feature and Algorithm Selection: Employs a dynamic iterative process to select features and statistical learning algorithms to optimize predictive accuracy for specified health outcomes.
  • Sequential Representation Mining: Uses sequential representation mining to explore and refine patient data representations derived from historical medical records.
  • Parallel and Outcome-Oriented Model Calibration: Supports parallel testing of multiple statistical learning algorithms and feature sets with outcome-oriented calibration for simultaneous evaluation and refinement across different outcomes.
  • Use of Pre-COVID-19 Patient Data: Incorporates clinical and demographic data from pre-COVID-19 medical records with over 600 features representing pre-existing health conditions and demographics.

Scientific Applications:

  • Risk Prediction for COVID-19 Adverse Outcomes: Predicts hospitalization, ICU admission, mechanical ventilation, and mortality in COVID-19-positive patients.
  • Clinical Prioritization and Resource Allocation: Supports healthcare resource allocation and prioritization of interventions by identifying high-risk patients, with a reported mean AUC ROC of 0.91 for mortality prediction.
  • Feature Importance and Epidemiologic Insights: Identifies clusters of influential pre-existing conditions and demographic predictors, including age and past medical history, to inform targeted preventive measures and vaccination strategies.

Methodology:

Analyzes a cohort of over 13,000 COVID-19-positive patients, models four adverse outcomes using extensive pre-COVID-19 feature sets, and applies iterative testing and calibration to identify clusters of influential features for each outcome.

Topics

Details

License:
GPL-2.0
Tool Type:
library, workflow
Programming Languages:
R
Added:
10/10/2021
Last Updated:
10/10/2021

Operations

Publications

Estiri H, Strasser ZH, Murphy SN. Individualized prediction of COVID-19 adverse outcomes with MLHO. Scientific Reports. 2021;11(1). doi:10.1038/s41598-021-84781-x. PMID:33674708. PMCID:PMC7935934.

Links