MorphoLibJ
MorphoLibJ implements mathematical morphology algorithms to perform segmentation, shape-based feature extraction, and analysis of binary and grey-level 2D and 3D biological images.
Key Features:
- Mathematical morphology operators: Provides a comprehensive collection of morphological operators for analyzing image shapes and topology.
- Binary and grey-level support: Operates on both binary and grey-level images for a range of contrast and labeling scenarios.
- 2D and 3D/volumetric processing: Processes two-dimensional and three-dimensional datasets, enabling volumetric image analysis.
- Segmentation and feature extraction: Implements operators that enable precise segmentation and extraction of morphological features from images.
Scientific Applications:
- Plant tissue 3D analysis: Processes 3D images of plant tissues for detailed morphological characterization.
- Biological image quantification: Segments and quantifies structures in 2D and 3D biological images for morphological studies.
Methodology:
Applies mathematical morphology operators to perform shape-based feature extraction, segmentation, and analysis of 2D and 3D image datasets.
Topics
Details
- Tool Type:
- plugin
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Image analysis
Filtering
Inputs
Outputs
Publications
Legland D, et al. MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ. Bioinformatics. 2016; 32:3532-3534. doi: 10.1093/bioinformatics/btw413
PMID: 27412086
Documentation
General
http://imagej.net/MorphoLibJ