mosaic
mosaic quantifies the mosaic structure of one-dimensional hybrid zones by fitting likelihood-based step-wise models to estimate spatial genetic patchiness.
Key Features:
- Likelihood-based step-wise model fitting: Fits step-wise models to hybrid zone data using a likelihood approach to estimate spatial genetic composition.
- Quantification of mosaicity: Estimates the degree of mosaic structure (patchiness or heterogeneity) within hybrid zones.
- Application to simulated and empirical data: Applies the likelihood method to both simulated datasets and empirical observations for validation and comparison.
- Simulation-based exploration: Uses computer simulations to investigate the roles of dispersal and assortative mating in hybrid zone formation and persistence.
- Selection scenario consideration: Incorporates analyses of frequency-dependent selection and selection against heterozygotes as factors influencing mosaic structure.
Scientific Applications:
- Investigating dispersal and assortative mating: Examines how long-distance dispersal and assortative mating generate and maintain patchy distributions in hybrid zones.
- Analyzing frequency-dependent selection: Studies how assortative mating can reduce mating success of rare males and create positive within-patch frequency-dependent selection.
- Exploring heterozygote disadvantage: Evaluates how selection against heterozygotes can disadvantage rare types and preserve mosaic structure.
- Population genetics and evolutionary biology studies: Provides a framework for testing hypotheses about evolutionary processes stabilizing hybrid zones.
Methodology:
Fits step-wise models via a likelihood-based approach to hybrid zone data and employs computer simulations to investigate dispersal, assortative mating, and selection scenarios.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Publications
M'Gonigle LK, FitzJohn RG. ASSORTATIVE MATING AND SPATIAL STRUCTURE IN HYBRID ZONES. Evolution. 2010;64(2):444-455. doi:10.1111/j.1558-5646.2009.00838.x. PMID:19780815.
PMID: 19780815
Documentation
Links
Software catalogue
http://www.mybiosoftware.com/mosaic-0-1-1-hybrid-zones-analysis.html