MOSS

MOSS integrates and analyzes multi-omic datasets using sparse value decomposition to perform dimensionality reduction and feature selection across genomics, transcriptomics, proteomics, and other omic layers for extraction of informative biological signals.


Key Features:

  • Sparse Value Decomposition: Employs sparse value decomposition to reduce dimensionality while preserving key signals across omic layers.
  • Multi-Omics Integration: Integrates genomics, transcriptomics, proteomics, and other omic datasets into a cohesive analytical framework.
  • Feature Selection: Identifies informative features within large-scale datasets to reveal biological mechanisms and cross-omic interactions.
  • Cluster Analysis: Groups similar samples or features based on multi-omic profiles to detect patterns associated with phenotypes or states.

Scientific Applications:

  • Systems Biology: Enables analysis of complex biological networks and pathways from integrated multi-omic data.
  • Precision Medicine: Supports comprehensive multi-omic analyses relevant to precision medicine investigations.
  • Disease Mechanism Investigation: Facilitates identification of molecular signatures and interactions underlying disease mechanisms.
  • Biomarker Discovery: Aids discovery of biomarkers by selecting informative features across omic layers.
  • Therapeutic Target Identification: Supports identification of candidate therapeutic targets through integrated feature analysis.

Methodology:

The methodology centers on sparse value decomposition for dimensionality reduction and integration of high-dimensional omics data while maintaining interpretability and enabling efficient computation on large-scale datasets.

Topics

Details

License:
GPL-2.0
Cost:
Free of charge (with restrictions)
Tool Type:
library
Operating Systems:
Mac, Windows
Programming Languages:
R
Added:
6/28/2022
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Publications

Gonzalez-Reymundez A, Grueneberg A, Lu G, Alves FC, Rincon G, Vazquez AI. MOSS: multi-omic integration with sparse value decomposition. Bioinformatics. 2022;38(10):2956-2958. doi:10.1093/bioinformatics/btac179. PMID:35561193. PMCID:PMC9113319.