MOSS
MOSS integrates and analyzes multi-omic datasets using sparse value decomposition to perform dimensionality reduction and feature selection across genomics, transcriptomics, proteomics, and other omic layers for extraction of informative biological signals.
Key Features:
- Sparse Value Decomposition: Employs sparse value decomposition to reduce dimensionality while preserving key signals across omic layers.
- Multi-Omics Integration: Integrates genomics, transcriptomics, proteomics, and other omic datasets into a cohesive analytical framework.
- Feature Selection: Identifies informative features within large-scale datasets to reveal biological mechanisms and cross-omic interactions.
- Cluster Analysis: Groups similar samples or features based on multi-omic profiles to detect patterns associated with phenotypes or states.
Scientific Applications:
- Systems Biology: Enables analysis of complex biological networks and pathways from integrated multi-omic data.
- Precision Medicine: Supports comprehensive multi-omic analyses relevant to precision medicine investigations.
- Disease Mechanism Investigation: Facilitates identification of molecular signatures and interactions underlying disease mechanisms.
- Biomarker Discovery: Aids discovery of biomarkers by selecting informative features across omic layers.
- Therapeutic Target Identification: Supports identification of candidate therapeutic targets through integrated feature analysis.
Methodology:
The methodology centers on sparse value decomposition for dimensionality reduction and integration of high-dimensional omics data while maintaining interpretability and enabling efficient computation on large-scale datasets.
Topics
Details
- License:
- GPL-2.0
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- library
- Operating Systems:
- Mac, Windows
- Programming Languages:
- R
- Added:
- 6/28/2022
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Clustering
Publications
Gonzalez-Reymundez A, Grueneberg A, Lu G, Alves FC, Rincon G, Vazquez AI. MOSS: multi-omic integration with sparse value decomposition. Bioinformatics. 2022;38(10):2956-2958. doi:10.1093/bioinformatics/btac179. PMID:35561193. PMCID:PMC9113319.