MouSR

MouSR provides analysis of transcriptional data from human and mouse tissues, performing quality control, differential gene expression, gene set enrichment, and microenvironmental cell population analyses of RNA-Seq datasets.

Key Features:

• Quality Control (QC): Performs quality control on RNA-Seq transcriptional datasets.
• Differential Gene Expression Analysis: Identifies differentially expressed genes from RNA-Seq data.
• Gene Set Enrichment Analysis: Performs gene set enrichment analysis to assess pathway-level changes.
• Microenvironmental Cell Population Analyses: Analyzes microenvironmental cell populations from RNA-Seq data.
• Customizable Analysis Parameters: Allows adjustment of analysis parameters to tailor computational analyses.

Scientific Applications:

• Genetically Engineered Mouse Models and Organoids: Analyzes transcriptional datasets derived from genetically engineered mouse models and organoids.
• Tumor Dataset Reproduction: Enables reproduction of key transcriptional findings demonstrated in tumor dataset analyses.
• Signaling Pathway Analysis: Supports comprehensive analyses of signaling pathways underlying transcriptional profiles for genomics and molecular biology research.

Methodology:

Leverages advanced bioinformatic algorithms to process and analyze RNA-Seq data.