MPD
MPD provides a centralized repository of standardized phenotypic, genotypic, and gene expression data for laboratory mouse strains to support translational research and discovery of genotype–phenotype relationships.
Key Features:
- Centralized Data Repository: Houses phenotypic, genotypic, gene expression, and strain-characteristics datasets contributed by researchers.
- Standard Reference Datasets: Maintains standardized reference datasets for selecting appropriate mouse strains and ensuring comparability across studies.
- Genotype–Phenotype Exploration: Provides structured datasets to explore genotype–phenotype relationships and identify genetic markers linked to traits.
- Hypothesis-Testing Tools: Offers tools for hypothesis testing using existing datasets to design and interpret experiments.
- Drug Studies and Intervention Data: Includes treatment/control datasets for drug studies and other interventions for preclinical analyses.
- Data Mining and Analysis: Supports data mining and analysis of large phenotypic, genotypic, and gene expression datasets.
Scientific Applications:
- Strain Selection for Translational Studies: Enables selection of appropriate mouse strains for studies of genetic disorders, drug efficacy, and other biomedical research.
- Genetic Basis of Traits and Disease: Facilitates discovery of genotype–phenotype relationships to identify genetic contributors to traits and disease.
- Preclinical Evaluation and Target Identification: Supports preclinical evaluation of interventions and identification of candidate targets for therapeutic development.
Methodology:
Employs standardized reference datasets together with data mining and hypothesis-testing tools to analyze phenotypic, genotypic, gene expression, and treatment/control datasets.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 3/30/2017
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Data retrieval
Publications
Maddatu TP, Grubb SC, Bult CJ, Bogue MA. Mouse Phenome Database (MPD). Nucleic Acids Research. 2011;40(D1):D887-D894. doi:10.1093/nar/gkr1061. PMID:22102583. PMCID:PMC3245053.