ms-data-core-api

The ms-data-core-api is a free and open-source library written in Java that provides a robust, pluggable programming interface and common data model for developing computational proteomics tools and pipelines. The library is based on controlled vocabularies/ontologies and captures the range of data types included in common proteomics experimental workflows. It includes readers for three Proteomics Standards Initiative standard file formats and other common mass spectra data formats. The library also includes a set of algorithms and tools to illustrate the ease of developing applications using the library.

Topic

Proteomics;Proteomics experiment

Detail

  • Operation: Modelling and simulation

  • Software interface: Command-line user interface

  • Language: Java

  • License: Apache License 2.0

  • Cost: Free

  • Version name: 2.0.5

  • Credit: The BBSRC ‘PROCESS’ grant, the BBSRC ‘Quantitative Proteomics’ grant, the BBSRC ‘Proteogenomics’ grant, the Wellcome Trustand J. U. by PURE (Protein Unit for Research in Europe), a project of North Rhine-Westphalia, Germany.

  • Input: -

  • Output: -

  • Contact: pride-support@ebi.ac.uk

  • Collection: -

  • Maturity: -

Publications

  • ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
  • Perez-Riverol Y, et al. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. 2015; 31:2903-5. doi: 10.1093/bioinformatics/btv250
  • https://doi.org/10.1093/bioinformatics/btv250
  • PMID: 25910694
  • PMC: PMC4547611

Download and documentation

< Back to DB search