MTBC Gene Atlas
Continuously updated functional re-annotation of the Mycobacterium tuberculosis complex gene set, anchored on the MTBC0 ancestral genome rather than on a single strain. Serves one record per gene combining Pfam domains, ESMFold structures with Foldseek search, protein language-model features, orthology, curated knowledge, protein association networks and intra-species selection inferred from 145209 sequenced genomes, with dated sources and a graded confidence level for every field. Intended as a successor to Mycobrowser, which is no longer maintained.
Topics
Collections
Details
- License:
- CC-BY-4.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- api, web application
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- Python
- Added:
- 8/12/2026
- Last Updated:
- 8/12/2026
Operations
Data Inputs & Outputs
Data retrieval
Inputs
Outputs
Other operations do not define inputs or outputs.
Publications
Documentation
General
https://mtbc.gclab.fr/aboutScope, evidence layers, citation and coordinate-system conventions.
Downloads
- API specificationhttps://mtbc.gclab.fr/api/v1Versioned read-only REST API over the served records.
- Downloads pagehttps://doi.org/10.5281/zenodo.20815246Zenodo concept DOI: resolves to the latest archived release (per-gene records, consolidated layers, reproducibility bundle).
Links
Repository
https://github.com/cguyeux/mtbc-gene-atlas(Source code repository, one script per evidence layer (MIT license).)