multi-dice
multi-dice is a software tool to infer comparative population genomics using hierarchical co‐demographic models of independent single‐population size changes. The multi-dice algorithm uses the aggregate site frequency spectrum (aSFS) for hierarchical, model-based inference.
Topic
Ecology;Population genomics
Detail
Operation: Phylogenetic tree comparison
Software interface: Command-line user interface
Language: R
License: GNU General Public License v3
Cost: Free
Version name: 1.0.2
Credit: FAPESP, NASA through the Dimensions of Biodiversity Program, National Science Foundation (NSF), National Institutes of Health (NIH).
Input: -
Output: -
Contact: Alexander T. Xue XanderXue@gmail.com
Collection: -
Maturity: -
Publications
- multi-dice: r package for comparative population genomic inference under hierarchical co-demographic models of independent single-population size changes.
- Xue AT, Hickerson MJ. multi-dice: r package for comparative population genomic inference under hierarchical co-demographic models of independent single-population size changes. Mol Ecol Resour. 2017 Nov;17(6):e212-e224. doi: 10.1111/1755-0998.12686. Epub 2017 May 30. PMID: 28449263; PMCID: PMC5724483.
- https://doi.org/10.1111/1755-0998.12686
- PMID: 28449263
- PMC: PMC5724483
Download and documentation
Documentation: https://github.com/xanderxue/Multi-DICE/blob/master/Multi-DICE-1.0.2_MANUAL.pdf
Home page: https://github.com/xanderxue/Multi-DICE
Links: https://github.com/xanderxue/Multi-DICE/blob/master/Multi-DICE-1.0.2_R_MANUAL.pdf
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