MyGene.Info
MyGene.Info provides high-performance programmatic access to comprehensive gene annotation data for integration into bioinformatics analyses.
Key Features:
- High-Performance Web Services: Operates as a RESTful web service and supports over three million queries per month, enabling rapid retrieval of gene annotation data.
- Comprehensive Data Integration: Aggregates gene annotations from multiple external sources into a unified representation, including information on gene functions, interactions, and regulatory mechanisms.
- Cloud-Based Infrastructure: Uses a cloud-based model for scalable storage and querying of biological annotation data.
Scientific Applications:
- Genomic Studies: Provides gene-level annotations to support analyses of gene function, interaction networks, and regulatory mechanisms.
- Variant Analysis: Links genes to genetic variants and interoperates with MyVariant.info to support variant interpretation.
- Data Integration Projects: Serves as a centralized gene annotation hub for integrating diverse biological datasets in downstream analyses.
Methodology:
Aggregates annotations from multiple sources and exposes them via a RESTful web service hosted on a cloud-based infrastructure.
Topics
Details
- Tool Type:
- api
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/3/2015
- Last Updated:
- 11/25/2024
Operations
Publications
Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C. High-performance web services for querying gene and variant annotation. Genome Biology. 2016;17(1). doi:10.1186/s13059-016-0953-9. PMID:27154141. PMCID:PMC4858870.
PMID: 27154141
PMCID: PMC4858870
Funding: - National Human Genome Research Institute: 1U01HG008473, U01HG006476
- National Institute of General Medical Sciences: GM083924, U54GM114833
- National Cancer Institute: K22CA188163
Documentation
General
http://mygene.infoLinks
Software catalogue
https://www.biocatalogue.org/services/3123