myGenomeBrowser
myGenomeBrowser provides a genome browser platform based on JBrowse for building, querying, and sharing genome visualizations to support genomic data exploration and analysis.
Key Features:
- User Autonomy: Enables users to manage, query, and analyze genomic datasets and genome browsers.
- Data Sharing Capabilities: Facilitates sharing of genome visualizations and datasets among researchers.
- Technical Implementation: Built on JBrowse and implemented using Perl, JavaScript, Apache, and Docker.
Scientific Applications:
- Genomic Data Analysis: Visualization and querying of genomic sequences and annotation tracks to support analysis of gene function and regulation.
- Collaborative Research: Sharing and comparison of genome annotations and tracks across researchers and institutions.
Methodology:
Built on the JBrowse framework and implemented using Perl, JavaScript, Apache, and Docker.
Topics
Details
- License:
- CECILL-B
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Perl
- Added:
- 1/9/2018
- Last Updated:
- 1/13/2019
Operations
Publications
Carrere S, Gouzy J. myGenomeBrowser: building and sharing your own genome browser. Bioinformatics. 2017;33(8):1255-1257. doi:10.1093/bioinformatics/btw800. PMID:28011789. PMCID:PMC5408841.
Documentation
User manual
https://framagit.org/BBRIC/myGenomeBrowserDownloads
- Source codehttps://framagit.org/BBRIC/myGenomeBrowser