myvariant

myvariant provides high-performance APIs for querying variant annotation information to support interpretation of genetic variants and is part of the MyGene.info and MyVariant.info suite.


Key Features:

  • High-Performance Data Access: Rapid access to extensive variant annotation datasets via robust APIs.
  • Cloud-Based Scalability: Uses cloud computing infrastructure to scale and handle large volumes of genomic annotation data.
  • Integrated Annotation Model: Offers a unified model for accessing gene and variant annotations to enable integration with other bioinformatics resources.

Scientific Applications:

  • Variant interpretation: Query detailed annotations for genetic variants to inform their biological implications.
  • Genomic studies integration: Integrate variant annotations into broader studies of gene function and disease mechanisms.
  • Support for precision medicine: Provide precise variant information to inform clinical decision-making.

Methodology:

Organizing and indexing large collections of biological annotation data to support efficient querying and deploying a cloud-based infrastructure for scalable performance.

Topics

Collections

Details

License:
Artistic-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
12/10/2018

Operations

Publications

Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C. MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services. Unknown Journal. 2015. doi:10.1101/035667.

Documentation

Downloads