MyVariant.info

MyVariant.info provides programmatic querying and retrieval of aggregated annotations for human genetic variants to support variant interpretation and genomic analyses.


Key Features:

  • REST Web Services: Exposes RESTful web services to query and retrieve detailed annotation data for human genetic variants.
  • High Performance: Provides high-performance querying to deliver rapid responses over large-scale variant annotation datasets.
  • Cloud-Based Architecture: Uses a scalable cloud-based architecture to organize, manage, and query biological annotation information.

Scientific Applications:

  • Variant Annotation: Provides essential annotations for genes and human genetic variants to support variant interpretation.
  • Genomic Association Studies: Supplies consolidated variant annotations useful for genomic association studies.
  • Personalized Medicine: Supports variant interpretation workflows relevant to personalized medicine.
  • Genetic Contribution to Disease: Enables analysis of genetic contributions to disease by consolidating variant evidence.

Methodology:

Aggregates annotations from multiple established databases and serves them via RESTful web services on a cloud-based infrastructure to support high-performance querying of large datasets.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
8/12/2018
Last Updated:
11/25/2024

Operations

Publications

Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C. High-performance web services for querying gene and variant annotation. Genome Biology. 2016;17(1). doi:10.1186/s13059-016-0953-9. PMID:27154141. PMCID:PMC4858870.

PMID: 27154141
PMCID: PMC4858870
Funding: - National Human Genome Research Institute: 1U01HG008473, U01HG006476 - National Institute of General Medical Sciences: GM083924, U54GM114833 - National Cancer Institute: K22CA188163

Documentation