nCov2019
nCov2019 provides aggregated COVID-19 case data and vaccine and therapeutic development information for epidemiological analysis and visualization in R.
Key Features:
- Data Aggregation: Collects stable COVID-19 case data from multiple authoritative sources, providing recent and historical records at country and province levels.
- Medical Progress Information: Reports global vaccine and therapeutic candidate data, including counts of 51 vaccines and 54 drugs under development as of January 14, 2021, and indicates pre-clinical status where available.
- R Language Interfaces: Exposes R functions for data retrieval, subsetting, and programmatic data operations.
- Visualization Methods: Supplies visualization routines to generate graphical representations of pandemic metrics and temporal patterns such as multiple peaks across regions.
Scientific Applications:
- Trend Analysis: Analyze temporal trends and regional case trajectories across countries and provinces.
- Epidemiological Surveillance: Monitor case counts and geographic spread for public-health analyses.
- Policy Support: Inform policy and intervention assessment through aggregated case and temporal data.
- Vaccine and Therapeutic Tracking: Track development status and counts of vaccine candidates and therapeutic drugs.
- Interdisciplinary Research: Provide dataset access for cross-disciplinary modeling and public-health research.
Methodology:
Systematic collection and aggregation of COVID-19 case data from multiple authoritative sources to country/province granularity; integration of these datasets with R functions for data retrieval and with visualization routines for graphical output.
Topics
Collections
Details
- License:
- Other
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 11/5/2021
- Last Updated:
- 11/6/2021
Operations
Publications
Wu T, Hu E, Ge X, Yu G. nCov2019: an R package for studying the COVID-19 coronavirus pandemic. PeerJ. 2021;9:e11421. doi:10.7717/peerj.11421. PMID:34178436. PMCID:PMC8199916.
DOI: 10.7717/PEERJ.11421
PMID: 34178436
PMCID: PMC8199916
Funding: - Startup fund from Southern Medical University: G618289088
Downloads
Links
Repository
https://github.com/YuLab-SMU/nCov2019