ncRI
ncRI catalogs validated non-coding RNAs implicated in inflammatory responses across human, mouse, and rat to support mechanistic and comparative studies.
Key Features:
- Extensive Data Collection: The database contains 11,166 entries documenting ncRNAs including 1,976 microRNAs (miRNAs), 1,377 long non-coding RNAs (lncRNAs), and 107 other ncRNAs from human, mouse, and rat.
- Detailed Annotations: Each entry provides the ncRNA name, associated inflammatory diseases, mechanistic insights, experimental validation techniques (microarray, RNA-seq, qRT-PCR), experimental sample types (cell lines and/or tissues), and expression patterns indicating up-regulation or down-regulation in inflammatory conditions.
- Reference Integration: Entries include PubMed IDs, publication years, and paper titles linking to original research.
Scientific Applications:
- Research on Immunotherapy: Enables study of ncRNA-mediated regulation of immune responses relevant to immunotherapy research.
- Mechanistic Studies: Supports identification of ncRNAs as mechanistic contributors, biomarkers, or therapeutic targets in inflammatory diseases.
- Cross-Species Analysis: Facilitates comparative and translational studies using human, mouse, and rat data.
Methodology:
No computational methods were specified in the provided description.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 3/8/2021
Operations
Publications
Wang S, Zhou S, Liu H, Meng Q, Ma X, Liu H, Wang L, Jiang W. ncRI: a manually curated database for experimentally validated non-coding RNAs in inflammation. BMC Genomics. 2020;21(1). doi:10.1186/s12864-020-06794-6. PMID:32487016. PMCID:PMC7268337.
PMID: 32487016
PMCID: PMC7268337
Funding: - National Natural Science Foundation of China: 61571169, 61801150
- Fundamental Research Funds for the Central University: NE2018101
- Fundamental Research Funds for the Provincial Universities: 2017JCZX52