NeLS
NeLS provides Norwegian life scientists and international collaborators with a project-oriented system to store, share, archive, and analyse omics-scale data.
Key Features:
- Data Storage and Sharing: Users can store, share, and archive omics-scale data in a project-oriented fashion.
- Online Data Analysis: Integrated instances of Galaxy enable online analysis of data, including a set of pre-defined workflows.
- Multiple Access Modes: The system can be accessed via web application, web API, and SSH.
- Sequencing Data Integration: Through collaboration with NorSeq, sequencing data generated in research projects is provided to researchers through NeLS.
- Sensitive Data Handling: Sensitive data such as individual genomic sequencing data are handled using the TSD (Services for Sensitive Data) platform provided by Sigma2 and the University of Oslo.
- SEEK Platform Integration: NeLS is integrated with the SEEK platform to store large data files produced by experiments described in SEEK.
- National e-Infrastructure Integration: NeLS integrates national e-infrastructure storage and computing resources.
Scientific Applications:
- Omics Data Management: Storage, sharing, and archiving of omics-scale data for life sciences research projects.
- Workflow-Based Data Analysis: Execution of pre-defined workflows for analysis of omics data through integrated Galaxy instances.
- High-Throughput Sequencing Data Distribution: Provision of sequencing data from NorSeq to involved researchers for downstream analysis.
- Sensitive Genomics Data Analysis: Secure handling and analysis of individual genomic sequencing data through the TSD platform.
Methodology:
NeLS integrates national e-infrastructure storage and computing resources, and is integrated with the SEEK platform and Galaxy workbench for data analysis and workflow execution.
Topics
Collections
Details
- License:
- Apache-2.0
- Maturity:
- Mature
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- api, command-line tool, workflow
- Operating Systems:
- Linux, Mac, Windows
- Added:
- 5/22/2018
- Last Updated:
- 8/1/2023
Operations
Publications
Documentation
Citation instructions', 'Command-line options', 'General', 'User manual
https://nels-docs.readthedocs.io/en/v0.1-beta/Downloads
- Source codehttps://doi.org/10.5281/zenodo.1251639Archived source code version 2018-05-16
- Source codehttps://github.com/elixir-no-nels/nels-coreSource code repo with NeLS core modules
Links
Repository
https://doi.org/10.5281/zenodo.1251638Related Tools
galaxy
Relation: includes