NeLS

NeLS provides Norwegian life scientists and international collaborators with a project-oriented system to store, share, archive, and analyse omics-scale data.


Key Features:

  • Data Storage and Sharing: Users can store, share, and archive omics-scale data in a project-oriented fashion.
  • Online Data Analysis: Integrated instances of Galaxy enable online analysis of data, including a set of pre-defined workflows.
  • Multiple Access Modes: The system can be accessed via web application, web API, and SSH.
  • Sequencing Data Integration: Through collaboration with NorSeq, sequencing data generated in research projects is provided to researchers through NeLS.
  • Sensitive Data Handling: Sensitive data such as individual genomic sequencing data are handled using the TSD (Services for Sensitive Data) platform provided by Sigma2 and the University of Oslo.
  • SEEK Platform Integration: NeLS is integrated with the SEEK platform to store large data files produced by experiments described in SEEK.
  • National e-Infrastructure Integration: NeLS integrates national e-infrastructure storage and computing resources.

Scientific Applications:

  • Omics Data Management: Storage, sharing, and archiving of omics-scale data for life sciences research projects.
  • Workflow-Based Data Analysis: Execution of pre-defined workflows for analysis of omics data through integrated Galaxy instances.
  • High-Throughput Sequencing Data Distribution: Provision of sequencing data from NorSeq to involved researchers for downstream analysis.
  • Sensitive Genomics Data Analysis: Secure handling and analysis of individual genomic sequencing data through the TSD platform.

Methodology:

NeLS integrates national e-infrastructure storage and computing resources, and is integrated with the SEEK platform and Galaxy workbench for data analysis and workflow execution.

Topics

Collections

Details

License:
Apache-2.0
Maturity:
Mature
Cost:
Free of charge (with restrictions)
Tool Type:
api, command-line tool, workflow
Operating Systems:
Linux, Mac, Windows
Added:
5/22/2018
Last Updated:
8/1/2023

Operations

Publications

Documentation

Citation instructions', 'Command-line options', 'General', 'User manual
https://nels-docs.readthedocs.io/en/v0.1-beta/

Downloads

Links

Repository
https://github.com/elixir-no-nels/nels-core
(Source code repo of the core modules)

Related Tools

galaxy
Relation: includes