NERDD

NERDD predicts small-molecule metabolism, flags assay-interference risks, and identifies natural products to support drug discovery research.


Key Features:

  • Metabolism Prediction: FAME predicts sites of metabolism in small organic molecules and GLORY identifies potential metabolites formed during phase 1 and phase 2 metabolic processes.
  • Assay Interference Detection: Hit Dexter flags compounds that may interfere with biological assays, reducing false positives and false negatives caused by compound interference.
  • Natural Product Identification: NP-Scout identifies natural products and their derivatives within large compound libraries to support exploration of biologically active lead structures.
  • Development of Additional Models: The platform includes several models and components currently under development to expand capabilities for drug discovery research.

Scientific Applications:

  • Compound Screening and Preclinical Testing: Supports stages from initial compound screening to preclinical testing by providing computational predictions for prioritization.
  • Lead Optimization: Metabolism and assay-interference predictions inform optimization of lead compounds for efficacy and safety.
  • Natural Product Discovery: Natural product identification accelerates discovery of novel therapeutic agents and lead structure development.

Methodology:

Uses advanced computational algorithms to analyze chemical structures and predict biological interactions and metabolic pathways, employing in silico high-throughput screening and analysis.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
3/8/2021

Operations

Publications

Stork C, Embruch G, Šícho M, de Bruyn Kops C, Chen Y, Svozil D, Kirchmair J. NERDD: a web portal providing access to <i>in silico</i> tools for drug discovery. Bioinformatics. 2019;36(4):1291-1292. doi:10.1093/bioinformatics/btz695. PMID:32077475.

PMID: 32077475
Funding: - DFG, German Research Foundation: KI 2085/1-1 - Bergen Research Foundation: BFS2017TMT01 - Ministry of Education, Youth and Sports of the Czech Republic: 21-SVV/2018, LM2015063, RVO 68378050-KAV-NPUI - China Scholarship Council: 201606010345