NES
NES manages and tracks experimental neuroscience data provenance to enable systematic collection, storage, and analysis of clinical, electrophysiological, and behavioral datasets.
Key Features:
- Data Management: Provides a unified repository for collection, consolidation, and storage of experimental data across a research group.
- Provenance Tracking: Records data provenance for experiments to support reproducibility and traceability of analyses.
- Standardized Formats and Analysis Reporting: Supports standardized data formats and analysis reporting to enhance reproducibility and facilitate data sharing.
- Modular Architecture: Employs a modular design that promotes interoperability, adaptability, and compliance with community standards.
- Metadata Management: Systematically captures and stores comprehensive metadata associated with experiments.
Scientific Applications:
- Clinical neuroscience: Standardizes and organizes clinical experimental data to support validation and integration of clinical findings.
- Electrophysiology: Manages electrophysiological datasets and associated metadata to facilitate reproducible analysis.
- Behavioral studies: Consolidates behavioral experiment data and metadata to enable reproducible analyses and data integration.
Methodology:
Implements a cohesive framework for data collection and storage that integrates with existing research workflows.
Topics
Details
- License:
- MPL-2.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, JavaScript
- Added:
- 6/15/2022
- Last Updated:
- 6/15/2022
Operations
Data Inputs & Outputs
Modelling and simulation
Publications
Ruiz-Olazar M, Rocha ES, Vargas CD, Braghetto KR. The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance. Frontiers in Neuroinformatics. 2022;15. doi:10.3389/fninf.2021.768615. PMID:35069167. PMCID:PMC8777234.
PMID: 35069167
PMCID: PMC8777234
Funding: - Conselho Nacional de Desenvolvimento Científico e Tecnológico: 309560/2017-9, 426579/2016-0
- Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro: CNE 202.785/2018, E-26/010.002418/2019, E26/010002474/2016
- Financiadora de Estudos e Projetos: PROINFRA HOSPITALAR grant #18.569-8
- Consejo Nacional de Ciencia y Tecnología, Paraguay: PINV18-665
Documentation
User manual', 'General
https://nes.readthedocs.io/en/latest/