nethet

nethet analyzes network heterogeneity in high-dimensional datasets to enable robust estimation and statistical comparison of network structures.


Key Features:

  • High-dimensional network analysis: Provides methods for estimating and comparing network structures derived from high-dimensional data.
  • Two-sample testing in Gaussian graphical models: Implements formal two-sample testing procedures for Gaussian graphical models, referencing Stadler and Mukherjee (2013, 2014).
  • Network-based clustering algorithm: Includes a clustering algorithm tailored to identify distinct network clusters within heterogeneous datasets.
  • Robust statistical methodology: Employs advanced statistical techniques for precise inference on network heterogeneity and structure.

Scientific Applications:

  • Genomics and molecular biology: Analysis of high-throughput, high-dimensional genomic data to detect differences in molecular interaction networks across samples.
  • Interdisciplinary network analysis: Comparative network analysis across scientific domains that require modeling of heterogeneity in network structures.

Methodology:

Implements two-sample testing within Gaussian graphical models and a network-based clustering algorithm for estimation and comparison of networks in high-dimensional data, following methodologies described by Stadler and Mukherjee (2013, 2014).

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

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