NeuroCirc

NeuroCirc integrates circRNA expression and circQTL data from the human brain to enable analysis of circRNA regulation, temporal dynamics during neuronal differentiation, and associations with genetic variation.


Key Features:

  • Multi-type circRNA expression datasets: Aggregates extensive circRNA expression data from the human brain, including bulk brain tissue samples.
  • circQTL integration: Incorporates circRNA quantitative trait loci (circQTL) data to link genetic variation with circRNA expression levels.
  • Temporal expression analysis: Provides time-course expression profiles of circRNAs during neuronal differentiation and cellular maturation.

Scientific Applications:

  • Functional studies: Prioritizes circRNAs for experimental validation based on integrated expression patterns and genetic associations.
  • Genetic research: Enables investigation of the genetic underpinnings of circRNA regulation and implications for neurological traits and disorders.
  • Developmental biology: Facilitates examination of circRNA roles across stages of neuronal differentiation and brain development.

Methodology:

Leverages large-scale datasets to harmonize diverse circRNA data and integrates circQTL and time-course expression information using bioinformatics tools and algorithms for data handling and visualization.

Topics

Details

Tool Type:
web application, workflow
Programming Languages:
JavaScript, Python
Added:
10/25/2021
Last Updated:
10/25/2021

Operations

Publications

Walsh K, Gokool A, Alinejad-Rokny H, Voineagu I. NeuroCirc: an integrative resource of circular RNA expression in the human brain. Bioinformatics. 2021;37(20):3664-3666. doi:10.1093/bioinformatics/btab230. PMID:34028497.

PMID: 34028497
Funding: - ARC Future Fellowship: FT170100359

Links