NeuroCirc
NeuroCirc integrates circRNA expression and circQTL data from the human brain to enable analysis of circRNA regulation, temporal dynamics during neuronal differentiation, and associations with genetic variation.
Key Features:
- Multi-type circRNA expression datasets: Aggregates extensive circRNA expression data from the human brain, including bulk brain tissue samples.
- circQTL integration: Incorporates circRNA quantitative trait loci (circQTL) data to link genetic variation with circRNA expression levels.
- Temporal expression analysis: Provides time-course expression profiles of circRNAs during neuronal differentiation and cellular maturation.
Scientific Applications:
- Functional studies: Prioritizes circRNAs for experimental validation based on integrated expression patterns and genetic associations.
- Genetic research: Enables investigation of the genetic underpinnings of circRNA regulation and implications for neurological traits and disorders.
- Developmental biology: Facilitates examination of circRNA roles across stages of neuronal differentiation and brain development.
Methodology:
Leverages large-scale datasets to harmonize diverse circRNA data and integrates circQTL and time-course expression information using bioinformatics tools and algorithms for data handling and visualization.
Topics
Details
- Tool Type:
- web application, workflow
- Programming Languages:
- JavaScript, Python
- Added:
- 10/25/2021
- Last Updated:
- 10/25/2021
Operations
Publications
Walsh K, Gokool A, Alinejad-Rokny H, Voineagu I. NeuroCirc: an integrative resource of circular RNA expression in the human brain. Bioinformatics. 2021;37(20):3664-3666. doi:10.1093/bioinformatics/btab230. PMID:34028497.
Links
Repository
https://github.com/Voineagulab/NeuroCirc