NeuroMatic
NeuroMatic provides acquisition, analysis, and simulation of electrophysiological data to support investigation of neuronal dynamics and synaptic function.
Key Features:
- Data Acquisition: Supports episodic, continuous, and triggered electrophysiological recordings.
- Data Analysis: Provides spike raster visualization, spontaneous event detection, curve fitting, and stationarity assessment.
- Simulations: Implements stochastic synaptic transmission models, synaptic short-term plasticity simulations, integrate-and-fire models, and Hodgkin-Huxley-like single-compartment neuron models.
- Integration with Igor Pro: Operates within Igor Pro to combine acquisition, analysis, and simulation functions and produce publication-quality graphics.
Scientific Applications:
- Electrophysiological studies: Supports offline analysis and online data processing during experiments.
- Dynamic-clamp experiments: Enables real-time simulation of synaptic conductance trains for dynamic-clamp implementations.
- Computational hypothesis testing: Facilitates exploration of neuronal and circuit behavior using stochastic synaptic models, short-term plasticity, integrate-and-fire, and Hodgkin-Huxley-like simulations.
Methodology:
Consolidates acquisition, analysis, and simulation functions within Igor Pro and supports conservation of experimental metadata and tracking of analyses performed.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/3/2018
- Last Updated:
- 4/26/2021
Operations
Publications
Rothman JS, Silver RA. NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data. Frontiers in Neuroinformatics. 2018;12. doi:10.3389/fninf.2018.00014. PMID:29670519. PMCID:PMC5893720.
PMID: 29670519
PMCID: PMC5893720
Funding: - Wellcome Trust: 086699, 095667, 203048
- European Research Council: 294667
- Medical Research Council: G0400598
- European Commission: LSHM-CT-2005-019055