NexusLIMS

NexusLIMS manages and consolidates experimental data and metadata for multi-user electron microscopy facilities to standardize metadata capture and support reproducible research.


Key Features:

  • Network Infrastructure: A networked architecture supports integration and communication across facility information technology resources.
  • Custom Software Package: A software component harvests and extracts experimental data from instrument and institutional sources to construct comprehensive experimental records.
  • Metadata Conformance: Generated metadata conforms to the Nexus Experiment schema for standardized documentation of experiments.

Scientific Applications:

  • Shared electron microscopy facilities: Centralizing and organizing data produced in multi-user electron microscopy environments to support collaborative experiments.
  • Metadata standardization and reproducibility: Applying the Nexus Experiment schema to improve reproducibility and transparency of electron microscopy experiments.
  • Experimental record aggregation: Compiling metadata and experimental data from diverse sources to create comprehensive records for each experiment.

Methodology:

A custom software package harvests and extracts experimental data from diverse sources and constructs comprehensive metadata records that conform to the Nexus Experiment schema.

Topics

Details

Cost:
Commercial
Tool Type:
web application
Added:
10/25/2021
Last Updated:
10/25/2021

Operations

Publications

Taillon JA, Bina TF, Plante RL, Newrock MW, Greene GR, Lau JW. NexusLIMS: A Laboratory Information Management System for Shared-Use Electron Microscopy Facilities. Microscopy and Microanalysis. 2021;27(3):511-527. doi:10.1017/s1431927621000222. PMID:33908340. PMCID:PMC8551308.

Documentation