nf-core-cageseq

nf-core/cageseq is a bioinformatics analysis pipeline used for CAGE-seq sequencing data.

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Topics

Gene expression Transcription factors and regulatory sites Sequencing Workflows

Collections

RIS3CAT VEIS nf-core

Details

License:: MIT
Maturity:: Mature
Cost:: Free of charge
Tool Type:: command-line tool, workflow
Operating Systems:: Linux
Programming Languages:: Groovy
Added:: 1/12/2021
Last Updated:: 1/12/2021

Operations

Transcriptional regulatory element prediction

Publications

Ewels PA, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology. 2020;38(3):276-278. doi:10.1038/s41587-020-0439-x. PMID:32055031.

DOI: 10.1038/s41587-020-0439-x

PMID: 32055031

Funding: - EC | Horizon 2020 Framework Programme: 815668 (BovReg) - Deutsche Forschungsgemeinschaft: 398967434–TRR 261, KO-2313/6-2, Liver Cancer SFB/TR 209

Documentation

General

https://nf-co.re/cageseq

User manual

https://nf-co.re/cageseq/usage

https://github.com/nf-core/cageseq/blob/master/LICENSE

Downloads

Source code
Version: 1.0.1
https://github.com/nf-core/cageseq/releases/tag/1.0.1
Release 1.0.1

Links

Repository

https://github.com/nf-core/cageseq

(Github Repository)

Social media

https://nfcore.slack.com/channels/cageseq

(Slack channel)

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