nf-core-eager

nf-core-eager provides reproducible, Nextflow-based workflows for analysis of ancient DNA (aDNA) genomic data.

Key Features:

• Reproducibility: Implements reproducible analyses and standardized pipelines for ancient genomic data.
• Integration of contemporary practices: Incorporates routine and up-to-date methods in ancient genomic analysis.
• nf-core development standards: Developed under the nf-core initiative with established software development standards and maintenance.
• Workflow orchestration: Employs Nextflow to orchestrate complex bioinformatics analyses.

Scientific Applications:

• Archaeological, palaeontological, and biological research: Supports genomic investigations using ancient DNA across archaeological, palaeontological, and biological contexts.
• Historical population dynamics: Enables analysis of past population structure and dynamics from ancient genomic data.
• Evolutionary biology: Facilitates studies of evolutionary relationships and processes using ancient genomes.
• Conservation genetics: Can be applied to conservation genetics investigations using aDNA-derived genomic information.

Methodology:

Workflows are orchestrated using the Nextflow workflow management system.