NGSML
NGSML standardizes the structured representation and exchange of next-generation sequencing (NGS) data using an XML-based schema to enable interoperability across sequencing platforms and analytical software.
Key Features:
- XML-Based Structure: Defines an XML schema to represent NGS data in a structured, machine-readable form.
- Unified Data Representation: Consolidates multiple types of NGS data into a single, consistent format for data management and exchange.
- Interoperability: Promotes compatibility between different sequencing platforms and analytical tools by providing a common data representation.
Scientific Applications:
- Basic Research: Enables integration and comparative analysis of diverse NGS datasets in genomic studies.
- Clinical Diagnostics: Standardizes genomic data exchange to support diagnostic workflows and result interpretation.
- Healthcare Data Management: Facilitates exchange and organization of patient-related genomic information for precision medicine initiatives.
Methodology:
Provides an XML-based specification/schema for the structured representation and exchange of NGS data.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows
- Programming Languages:
- Java
- Added:
- 6/15/2022
- Last Updated:
- 6/15/2022
Operations
Publications
Yu C, Qi X, Yan W, Wu W, Shen B. Next-Generation Sequencing Markup Language (NGSML): A Medium for the Representation and Exchange of NGS Data. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2023;20(1):576-585. doi:10.1109/tcbb.2022.3144170. PMID:35085089.
PMID: 35085089
Funding: - National Natural Science Foundation of China: 32070671