NIMAA
NIMAA performs nominal data mining in R by integrating graph theory and data mining to analyze datasets composed of nominal variables.
Key Features:
- Graph Construction: Creates weighted and unweighted bipartite graphs from nominal variables.
- Label Analysis and Clustering: Computes label similarities and clusters labels into super-labels.
- Validation and Prediction: Validates clustering results and predicts bipartite edges by imputing missing edge weights.
- Visualization Tools: Provides visualization functions for interpreting graph-based structures and clustering outcomes.
Scientific Applications:
- Nominal data exploration in biology: Enables identification of patterns and relationships among categorical variables in complex biological datasets.
Methodology:
Integration of graph-theoretic and data-mining methods to construct weighted and unweighted bipartite graphs from nominal variables; computation of label similarity and clustering into super-labels; validation of clustering and imputation of missing edge weights to predict bipartite edges; generation of visualizations for results.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 9/17/2022
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Clustering
Inputs
Outputs
Publications
Jafari M, Chen C, Mirzaie M, Tang J. NIMAA: an R/CRAN package to accomplish NomInal data Mining AnAlysis. Unknown Journal. 2022. doi:10.1101/2022.01.13.475835.
Documentation
Links
Repository
https://github.com/jafarilab/NIMAA