NLmCED Filter
NLmCED Filter enhances Chemical Exchange Saturation Transfer (CEST)-MRI images by denoising 3D MRI data to improve detection and quantification of tumor extracellular pH.
Key Features:
- Hybrid filtering: Integrates Non-Local Mean (NLM) filtering with the Anisotropic Diffusion Tensor Method (Coherence Enhancing Diffusion) to combine nonlocal averaging and anisotropic diffusion.
- Rician noise handling: Tailored to address Rician-distributed noise prevalent in 3D Magnetic Resonance Imaging (MRI).
- Edge and feature preservation: Preserves edges and essential anatomical features while reducing noise for accurate image interpretation.
- CEST contrast enhancement: Improves contrast efficiency and signal-to-noise ratio (SNR) for Chemical Exchange Saturation Transfer MRI techniques.
- Contrast-agent quantification: Enhances detection and quantification of injected contrast agents such as iopamidol within tumor tissues.
- Validation across modalities: Demonstrated performance through simulations, in vitro experiments, and in vivo validations.
- 3D MRI compatibility: Applicable to three-dimensional MRI datasets used in tumor microenvironment analysis.
Scientific Applications:
- Tumor pH mapping: Enables more accurate mapping and quantification of tumor extracellular pH using CEST-MRI.
- Contrast-agent detection: Facilitates sensitive detection and quantification of iopamidol and similar agents in tumor tissues.
- Tumor microenvironment analysis: Supports investigation of tumor progression and therapeutic resistance through improved imaging of microenvironmental parameters.
- Quantitative 3D MRI studies: Reduces noise and enhances SNR in 3D MRI datasets for quantitative imaging workflows.
Methodology:
Combines Non-Local Mean (NLM) filtering with an Anisotropic Diffusion Tensor Method to denoise 3D MRI with Rician noise while preserving edges; validated with simulations, in vitro, and in vivo experiments.
Topics
Collections
Details
- License:
- CC-BY-NC-ND-4.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Windows, Mac, Linux
- Programming Languages:
- Python, MATLAB
- Added:
- 7/13/2023
- Last Updated:
- 11/5/2025
Operations
Data Inputs & Outputs
Publications
Romdhane F, Benzarti F, Amiri H. A new method for three-dimensional magnetic resonance images denoising. International Journal of Computational Vision and Robotics. 2018;8(1):1. doi:10.1504/ijcvr.2018.090012.
Romdhane F, Villano D, Irrera P, Consolino L, Longo DL. Evaluation of a similarity anisotropic diffusion denoising approach for improving in vivo CEST‐MRI tumor pH imaging. Magnetic Resonance in Medicine. 2021;85(6):3479-3496. doi:10.1002/mrm.28676.