NLmCED Filter

NLmCED Filter enhances Chemical Exchange Saturation Transfer (CEST)-MRI images by denoising 3D MRI data to improve detection and quantification of tumor extracellular pH.


Key Features:

  • Hybrid filtering: Integrates Non-Local Mean (NLM) filtering with the Anisotropic Diffusion Tensor Method (Coherence Enhancing Diffusion) to combine nonlocal averaging and anisotropic diffusion.
  • Rician noise handling: Tailored to address Rician-distributed noise prevalent in 3D Magnetic Resonance Imaging (MRI).
  • Edge and feature preservation: Preserves edges and essential anatomical features while reducing noise for accurate image interpretation.
  • CEST contrast enhancement: Improves contrast efficiency and signal-to-noise ratio (SNR) for Chemical Exchange Saturation Transfer MRI techniques.
  • Contrast-agent quantification: Enhances detection and quantification of injected contrast agents such as iopamidol within tumor tissues.
  • Validation across modalities: Demonstrated performance through simulations, in vitro experiments, and in vivo validations.
  • 3D MRI compatibility: Applicable to three-dimensional MRI datasets used in tumor microenvironment analysis.

Scientific Applications:

  • Tumor pH mapping: Enables more accurate mapping and quantification of tumor extracellular pH using CEST-MRI.
  • Contrast-agent detection: Facilitates sensitive detection and quantification of iopamidol and similar agents in tumor tissues.
  • Tumor microenvironment analysis: Supports investigation of tumor progression and therapeutic resistance through improved imaging of microenvironmental parameters.
  • Quantitative 3D MRI studies: Reduces noise and enhances SNR in 3D MRI datasets for quantitative imaging workflows.

Methodology:

Combines Non-Local Mean (NLM) filtering with an Anisotropic Diffusion Tensor Method to denoise 3D MRI with Rician noise while preserving edges; validated with simulations, in vitro, and in vivo experiments.

Topics

Collections

Details

License:
CC-BY-NC-ND-4.0
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Windows, Mac, Linux
Programming Languages:
Python, MATLAB
Added:
7/13/2023
Last Updated:
11/5/2025

Operations

Data Inputs & Outputs

Data filtering

Inputs

Outputs

Publications

Romdhane F, Benzarti F, Amiri H. A new method for three-dimensional magnetic resonance images denoising. International Journal of Computational Vision and Robotics. 2018;8(1):1. doi:10.1504/ijcvr.2018.090012.

Romdhane F, Villano D, Irrera P, Consolino L, Longo DL. Evaluation of a similarity anisotropic diffusion denoising approach for improving in vivo CEST‐MRI tumor pH imaging. Magnetic Resonance in Medicine. 2021;85(6):3479-3496. doi:10.1002/mrm.28676.

Funding: - H2020 Health: GLINT #667510 - Associazione Italiana per la Ricerca sul Cancro: MFAG #20153 - Compagnia di San Paolo: #CSTO165925

Links