NMJ-Analyser
NMJ-Analyser quantifies and classifies neuromuscular junction (NMJ) morphology to provide high-throughput, quantitative assessment of NMJ structure and innervation status in neuromuscular disease models.
Key Features:
- Automated Morphological Screening: Generates 29 biologically relevant features to quantitatively define healthy and aberrant neuromuscular synapses.
- Machine Learning Integration: Employs machine learning algorithms to diagnose NMJ degeneration, validated with 95% accuracy, 88% sensitivity, and 97% specificity.
- High-Throughput Image Processing: Processes input directories of jpg or png image files and requires NMJs to be separated by at least 20 micrometers to avoid analysis compromise.
Scientific Applications:
- Longitudinal and comparative studies: Validated in longitudinal studies of wildtype mice and four neuromuscular disease models, including three amyotrophic lateral sclerosis (ALS) models and one peripheral neuropathy model.
- NMJ pathology detection in ALS models: Detects structural changes at the NMJ, particularly in nerve terminals of mutant TDP43 and FUS ALS models, supporting analysis of early degeneration and disease progression.
Methodology:
Processes jpg/png NMJ images from input directories, extracts 29 morphological features and applies machine learning algorithms for classification; requires NMJs separated ≥20 micrometers.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 1/18/2021
- Last Updated:
- 3/8/2021
Operations
Publications
Maza AM, Jarvis S, Lee WC, Cunningham TJ, Schiavo G, Secrier M, Fratta P, Sleigh JN, Sudre CH, Fisher EM. NMJ-Analyser: high-throughput morphological screening of neuromuscular junctions identifies subtle changes in mouse neuromuscular disease models. Unknown Journal. 2020. doi:10.1101/2020.09.24.293886.