NMRProcFlow
NMRProcFlow processes and visualizes one-dimensional (1D) nuclear magnetic resonance (NMR) spectra to support metabolomics analyses of ^1H and ^13C NMR data.
Key Features:
- 1D ^1H and ^13C NMR support: Handles one-dimensional ^1H and ^13C NMR spectra for metabolomics analyses.
- Baseline correction: Performs comprehensive baseline correction on 1D NMR spectra.
- Chemical shift calibration: Provides precise chemical shift calibration.
- Spectral alignment: Performs alignment of spectra to correct chemical shift variations.
- Peak disentanglement: Disentangles intertwined peaks in metabolomics spectra.
- Spectral visualization with experimental factors: Visualizes NMR spectra alongside experimental-factor levels to link experimental design with analyses.
- Raw-to-interpretable processing: Processes spectra from raw data to interpretable results.
Scientific Applications:
- Metabolic fingerprinting: Enables metabolic fingerprinting through processed 1D NMR spectral profiles.
- Targeted metabolomics: Supports targeted metabolomics studies by facilitating analysis of metabolite-related signals in 1D NMR spectra.
- Integration with experimental design: Connects experimental-factor levels with spectral visualization to facilitate statistical analyses.
Methodology:
Computational steps explicitly include baseline correction, chemical shift calibration, spectral alignment, disentanglement of intertwined peaks, visualization of spectra alongside experimental-factor levels, and processing from raw data to interpretable results.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- desktop application, web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R, PHP, JavaScript
- Added:
- 4/13/2017
- Last Updated:
- 11/24/2024
Operations
Publications
Jacob D, Deborde C, Lefebvre M, Maucourt M, Moing A. NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics. 2017;13(4). doi:10.1007/s11306-017-1178-y. PMID:28261014. PMCID:PMC5313591.
Documentation
User manual
https://nmrprocflow.orgDownloads
- Downloads pageVersion: 1.4https://nmrprocflow.org/c_downloadThere are three ways to install NMRProcFlow, depending on the type of installation : Desktop PC, Linux Server, CLoud
- Software packageVersion: 1.4https://github.com/INRA/Rnmr1DRnmr1D package : Rnmr1D is the main module in the NMRProcFlow web application (http://nmrprocflow.org) concerning the NMR spectra processing.
- Source codeVersion: 1.4https://github.com/INRA/NMRProcFlow