NMRtist

NMRtist automates analysis of protein NMR spectra to perform peak picking, chemical shift assignment, and derivation of protein three-dimensional structures from NMR data.


Key Features:

  • Automated Peak Picking: Uses algorithmic analysis to identify peaks in NMR spectra for subsequent interpretation.
  • Chemical Shift Assignment: Employs deep learning models to assign chemical shifts from NMR spectral data.
  • Protein Structure Determination: Derives protein three-dimensional configurations from NMR data.
  • Virtual Storage for Spectra Deposition: Provides deposition and storage of NMR spectra for archival and downstream analysis.

Scientific Applications:

  • Structural Biology: Accelerates interpretation of protein NMR experiments and supports protein structure determination workflows.
  • High-throughput NMR Analysis: Enables processing of large numbers of protein NMR spectra to support high-throughput studies.
  • Data Archiving and Reuse: Facilitates deposition and reuse of NMR spectra within bioinformatics and computational studies.

Methodology:

Leverages deep learning algorithms trained on extensive datasets to perform peak picking and chemical shift assignment with high accuracy; models are optimized on large-scale computational resources and integrate cloud computing to handle large volumes of NMR data.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
3/18/2023
Last Updated:
3/18/2023

Operations

Publications

Klukowski P, Riek R, Güntert P. NMRtist: an online platform for automated biomolecular NMR spectra analysis. Bioinformatics. 2023;39(2). doi:10.1093/bioinformatics/btad066. PMID:36723167. PMCID:PMC9913044.

PMID: 36723167
PMCID: PMC9913044
Funding: - European Union: 891690