noisy_oneclick
noisy_oneclick cleans aligned sequences from high-throughput next-generation DNA sequencing data to facilitate accurate downstream analyses.
Key Features:
- Automation and tracking: Automates cleaning of aligned sequences and records analytical steps to support transparency and reproducibility.
- Galaxy integration: Executes within the Galaxy project infrastructure to scale analyses for large next-generation sequencing datasets.
Scientific Applications:
- Next-generation sequencing preprocessing: Prepares aligned sequences from high-throughput DNA sequencing for downstream analytical workflows in biomedical research.
- Large-scale biomedical analyses: Supports management and processing of extensive sequencing datasets common in biomedical research studies.
Methodology:
Operates within the Galaxy project environment, automating sequence data cleaning and recording all analytical steps as provenance.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Sequence alignment analysis
Publications
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.