noisy_oneclick

noisy_oneclick cleans aligned sequences from high-throughput next-generation DNA sequencing data to facilitate accurate downstream analyses.


Key Features:

  • Automation and tracking: Automates cleaning of aligned sequences and records analytical steps to support transparency and reproducibility.
  • Galaxy integration: Executes within the Galaxy project infrastructure to scale analyses for large next-generation sequencing datasets.

Scientific Applications:

  • Next-generation sequencing preprocessing: Prepares aligned sequences from high-throughput DNA sequencing for downstream analytical workflows in biomedical research.
  • Large-scale biomedical analyses: Supports management and processing of extensive sequencing datasets common in biomedical research studies.

Methodology:

Operates within the Galaxy project environment, automating sequence data cleaning and recording all analytical steps as provenance.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

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