noreturn

noreturn removes carriage returns from ASCII files to standardize text formatting for molecular biology data and downstream analyses.


Key Features:

  • Carriage return removal: Removes carriage return (CR) characters from ASCII text files to standardize text formatting.
  • EMBOSS integration: Operates as part of the EMBOSS suite and integrates with EMBOSS tools and resources.
  • Extensible C programming libraries: Built on EMBOSS's extensible C programming libraries for efficient processing and manipulation of text files.
  • ACD-based configuration: Uses EMBOSS Application Configuration Definition (ACD) files for customization and application development.
  • EMBOSS database support: Supports configuration of EMBOSS databases for preprocessed text data.
  • Third-party tool integration: Can be wrapped or ported within EMBOSS to interoperate with third-party bioinformatics tools.

Scientific Applications:

  • Data formatting: Ensures ASCII text is correctly formatted for downstream analyses and database integration in molecular biology.
  • Workflow integration: Serves as a preprocessing step within larger bioinformatics workflows to meet specific format requirements.
  • Database configuration: Prepares text files for EMBOSS database setup and utilization.
  • Tool wrapping and integration: Enables incorporation into broader analytical frameworks that include third-party tools via EMBOSS wrapping.

Methodology:

Implemented using EMBOSS's extensible C programming libraries and configured via Application Configuration Definition (ACD) files.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

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