noreturn
noreturn removes carriage returns from ASCII files to standardize text formatting for molecular biology data and downstream analyses.
Key Features:
- Carriage return removal: Removes carriage return (CR) characters from ASCII text files to standardize text formatting.
- EMBOSS integration: Operates as part of the EMBOSS suite and integrates with EMBOSS tools and resources.
- Extensible C programming libraries: Built on EMBOSS's extensible C programming libraries for efficient processing and manipulation of text files.
- ACD-based configuration: Uses EMBOSS Application Configuration Definition (ACD) files for customization and application development.
- EMBOSS database support: Supports configuration of EMBOSS databases for preprocessed text data.
- Third-party tool integration: Can be wrapped or ported within EMBOSS to interoperate with third-party bioinformatics tools.
Scientific Applications:
- Data formatting: Ensures ASCII text is correctly formatted for downstream analyses and database integration in molecular biology.
- Workflow integration: Serves as a preprocessing step within larger bioinformatics workflows to meet specific format requirements.
- Database configuration: Prepares text files for EMBOSS database setup and utilization.
- Tool wrapping and integration: Enables incorporation into broader analytical frameworks that include third-party tools via EMBOSS wrapping.
Methodology:
Implemented using EMBOSS's extensible C programming libraries and configured via Application Configuration Definition (ACD) files.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html