NPBS

NPBS compiles curated relational data linking natural products to their biological sources, providing chemical structures, computable molecular properties, and literature references to support natural product research.


Key Features:

  • Relational Data: Links specific species to derived natural products and vice versa, representing bidirectional source–product relationships.
  • Diverse Biological Sources: Covers biological sources including plant, bacterial, fungal, and marine organisms.
  • Chemical Structure Data: Provides detailed chemical structure information for each natural molecule.
  • Computable Molecular Properties: Includes computable molecular properties to enable downstream computational analyses.
  • References: Associates all relational entries with literature references for traceability and verification.

Scientific Applications:

  • Dereplication: Facilitates dereplication to avoid redundant isolation and characterization of known natural products.
  • Biodiversity Exploration: Supports biodiversity studies and the discovery of novel compounds from under‑researched organisms.

Methodology:

Manually curated from extensive literature reviews with verification of relational data against cited references.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
3/8/2021

Operations

Publications

Xu T, Chen W, Zhou J, Dai J, Li Y, Zhao Y. NPBS database: a chemical data resource with relational data between natural products and biological sources. Database. 2020;2020. doi:10.1093/database/baaa102. PMID:33306802. PMCID:PMC7731925.

PMID: 33306802
PMCID: PMC7731925
Funding: - SGST: 18DZ2294000 - CSDB: XXH135 - National Natural Science Foundation of China: 21805303