NPBS
NPBS compiles curated relational data linking natural products to their biological sources, providing chemical structures, computable molecular properties, and literature references to support natural product research.
Key Features:
- Relational Data: Links specific species to derived natural products and vice versa, representing bidirectional source–product relationships.
- Diverse Biological Sources: Covers biological sources including plant, bacterial, fungal, and marine organisms.
- Chemical Structure Data: Provides detailed chemical structure information for each natural molecule.
- Computable Molecular Properties: Includes computable molecular properties to enable downstream computational analyses.
- References: Associates all relational entries with literature references for traceability and verification.
Scientific Applications:
- Dereplication: Facilitates dereplication to avoid redundant isolation and characterization of known natural products.
- Biodiversity Exploration: Supports biodiversity studies and the discovery of novel compounds from under‑researched organisms.
Methodology:
Manually curated from extensive literature reviews with verification of relational data against cited references.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 3/8/2021
Operations
Publications
Xu T, Chen W, Zhou J, Dai J, Li Y, Zhao Y. NPBS database: a chemical data resource with relational data between natural products and biological sources. Database. 2020;2020. doi:10.1093/database/baaa102. PMID:33306802. PMCID:PMC7731925.
PMID: 33306802
PMCID: PMC7731925
Funding: - SGST: 18DZ2294000
- CSDB: XXH135
- National Natural Science Foundation of China: 21805303