NT-seq
NT-seq maps DNA methylation across prokaryotic genomes, enabling simultaneous profiling of N^6-methyladenine (6mA), N^4-methylcytosine (4mC), and 5-methylcytosine (5mC) for comprehensive methylome analysis.
Key Features:
- Simultaneous Mapping: Maps N^6-methyladenine (6mA), N^4-methylcytosine (4mC), and 5-methylcytosine (5mC) in prokaryotic genomes within a single workflow.
- Reliability: Detects all known methylation motifs in bacterial genomes.
- De Novo Motif Identification: Identifies novel methylation motifs de novo from sequence data.
- Chemical-based Sequencing: Employs a chemical-based sequencing approach to enable detection of 6mA, 4mC, and 5mC.
Scientific Applications:
- Genomic Studies: Characterizing the distribution and motifs of 6mA, 4mC, and 5mC across bacterial genomes.
- Epigenetic Research: Investigating how prokaryotic DNA methylation influences gene expression, genome stability, and cellular processes.
Methodology:
NT-seq employs a chemical-based sequencing approach to map N^6-methyladenine (6mA), N^4-methylcytosine (4mC), and 5-methylcytosine (5mC).
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 9/5/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Li X, Guo S, Cui Y, Zhang Z, Luo X, Angelova MT, Landweber LF, Wang Y, Wu TP. NT-seq: a chemical-based sequencing method for genomic methylome profiling. Genome Biology. 2022;23(1). doi:10.1186/s13059-022-02689-9. PMID:35637459. PMCID:PMC9150344.
PMID: 35637459
PMCID: PMC9150344
Funding: - Cancer Prevention and Research Institute of Texas: RR180072
- Rivkin Center for Ovarian Cancer: 2020
- National Institute of Environmental Health Sciences: R35ES031707