NucleaRDB

NucleaRDB aggregates, validates, and disseminates integrated experimental and computational data on nuclear hormone receptors (NHRs) to support analysis of sequences, ligand binding constants, mutations, and structure–function relationships.


Key Features:

  • Data integration: Collects heterogeneous NHR-related data including sequences, ligand binding constants, and mutations.
  • Computational datasets: Stores computationally derived information such as multiple sequence alignments and homology models.
  • Data validation: Applies validation processes to produce curated, validated datasets for NHR research.

Scientific Applications:

  • Drug discovery: Supports identification and characterization of NHR ligands and ligand–receptor interactions using binding constants and structural models.
  • Molecular biology: Enables sequence- and structure-based analyses of NHRs using alignments and homology models.
  • Genetics and mutation analysis: Facilitates assessment of the impact of genetic mutations on NHR function using curated mutation data.
  • Mechanistic studies: Aids elucidation of receptor mechanisms and ligand interactions by integrating experimental and computational evidence.

Methodology:

Automated data integration from diverse sources, validation processes, and generation/storage of multiple sequence alignments and homology models.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
3/30/2017
Last Updated:
11/25/2024

Operations

Publications

Vroling B, Thorne D, McDermott P, Joosten H, Attwood TK, Pettifer S, Vriend G. NucleaRDB: information system for nuclear receptors. Nucleic Acids Research. 2011;40(D1):D377-D380. doi:10.1093/nar/gkr960. PMID:22064856. PMCID:PMC3245090.