OligoPrime
OligoPrime manages oligonucleotide records and lifecycle information to support precise tracking and retrieval for molecular biology experiments.
Key Features:
- Lifecycle Management: Tracks all stages of an oligonucleotide's lifecycle including ordering, storage, application, and disposal.
- Advanced Filtering and Search: Filters and searches oligonucleotides by parameters such as exact project location, sequence data, and availability status.
- Collaborative Database Sharing: Maintains a shared oligonucleotide database that enables multiple researchers within the same laboratory or research group to access and manage entries.
- Role-Based Access Control: Implements role-based permissions with distinct access levels for users ranging from students to primary investigators.
Scientific Applications:
- Laboratory inventory management: Enhances transparency and efficiency of oligonucleotide management within academic laboratories and research groups.
- Support for molecular biology techniques: Enables detailed tracking and retrieval of oligonucleotides for experiments that require precise oligo usage.
- High-throughput oligonucleotide projects: Facilitates projects involving large numbers of oligonucleotides by providing meticulous record-keeping and centralized access.
Methodology:
A centralized oligonucleotide database records ordering, storage, application, and disposal metadata and provides parameter-based filtering/search and role-based access control.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Java, JavaScript
- Added:
- 2/12/2022
- Last Updated:
- 2/12/2022
Operations
Publications
Ravnik Š, Žabkar I, Prosenc Zmrzljak U, Jovčevska I, Šamec N, Moškon M, Videtič Paska A. OligoPrime: An Information System for Oligonucleotide Management. Biomedical Engineering and Computational Biology. 2021;12. doi:10.1177/11795972211041983. PMID:34539193. PMCID:PMC8442484.