OligoPrime

OligoPrime manages oligonucleotide records and lifecycle information to support precise tracking and retrieval for molecular biology experiments.


Key Features:

  • Lifecycle Management: Tracks all stages of an oligonucleotide's lifecycle including ordering, storage, application, and disposal.
  • Advanced Filtering and Search: Filters and searches oligonucleotides by parameters such as exact project location, sequence data, and availability status.
  • Collaborative Database Sharing: Maintains a shared oligonucleotide database that enables multiple researchers within the same laboratory or research group to access and manage entries.
  • Role-Based Access Control: Implements role-based permissions with distinct access levels for users ranging from students to primary investigators.

Scientific Applications:

  • Laboratory inventory management: Enhances transparency and efficiency of oligonucleotide management within academic laboratories and research groups.
  • Support for molecular biology techniques: Enables detailed tracking and retrieval of oligonucleotides for experiments that require precise oligo usage.
  • High-throughput oligonucleotide projects: Facilitates projects involving large numbers of oligonucleotides by providing meticulous record-keeping and centralized access.

Methodology:

A centralized oligonucleotide database records ordering, storage, application, and disposal metadata and provides parameter-based filtering/search and role-based access control.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Java, JavaScript
Added:
2/12/2022
Last Updated:
2/12/2022

Operations

Publications

Ravnik Š, Žabkar I, Prosenc Zmrzljak U, Jovčevska I, Šamec N, Moškon M, Videtič Paska A. OligoPrime: An Information System for Oligonucleotide Management. Biomedical Engineering and Computational Biology. 2021;12. doi:10.1177/11795972211041983. PMID:34539193. PMCID:PMC8442484.