Omics Playground
Omics Playground provides visualization, analysis, and exploration of large-scale transcriptomics, proteomics, and single-cell omics datasets to support tertiary interpretation and biological discovery.
Key Features:
- Visualization: Visualizes large-scale omics datasets for data inspection and result presentation.
- Analysis: Performs computational analyses for transcriptomics and proteomics datasets.
- Exploration: Enables exploratory analysis of omics data to interrogate biological signals.
- Single-cell data analysis: Emphasizes analysis capabilities specific to single-cell omics datasets.
- Integrated methods: Integrates multiple analytical methods into a consolidated suite for omics analysis.
- Raw-to-tertiary processing: Supports transitioning from raw data to tertiary analysis and biological interpretation.
- Large-scale data handling: Addresses analysis and interpretation of large-scale omics datasets.
Scientific Applications:
- Transcriptomics: Analysis and interpretation of transcriptomics datasets for biological insight.
- Proteomics: Analysis and interpretation of proteomics datasets for biological insight.
- Single-cell omics: Analysis of single-cell datasets to support single-cell level investigations.
- Tertiary data interpretation: Tertiary analysis and interpretation of complex, large-scale omics data.
- Biological discovery: Supporting downstream discovery and interpretation in genomics and proteomics research.
Methodology:
Computational steps explicitly include data visualization, analysis, exploration, integration of multiple analytical methods, and support for transitioning raw data to tertiary analysis and biological interpretation.
Topics
Details
- Tool Type:
- command-line tool, library
- Programming Languages:
- R
- Added:
- 3/19/2021
- Last Updated:
- 4/11/2021
Operations
Publications
Akhmedov M, Martinelli A, Geiger R, Kwee I. Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data. NAR Genomics and Bioinformatics. 2019;2(1). doi:10.1093/nargab/lqz019. PMID:33575569. PMCID:PMC7671354.
Documentation
User manual
https://omicsplayground.readthedocs.ioDownloads
- Container filehttps://hub.docker.com/r/bigomics/omicsplayground