Omics Playground

Omics Playground provides visualization, analysis, and exploration of large-scale transcriptomics, proteomics, and single-cell omics datasets to support tertiary interpretation and biological discovery.


Key Features:

  • Visualization: Visualizes large-scale omics datasets for data inspection and result presentation.
  • Analysis: Performs computational analyses for transcriptomics and proteomics datasets.
  • Exploration: Enables exploratory analysis of omics data to interrogate biological signals.
  • Single-cell data analysis: Emphasizes analysis capabilities specific to single-cell omics datasets.
  • Integrated methods: Integrates multiple analytical methods into a consolidated suite for omics analysis.
  • Raw-to-tertiary processing: Supports transitioning from raw data to tertiary analysis and biological interpretation.
  • Large-scale data handling: Addresses analysis and interpretation of large-scale omics datasets.

Scientific Applications:

  • Transcriptomics: Analysis and interpretation of transcriptomics datasets for biological insight.
  • Proteomics: Analysis and interpretation of proteomics datasets for biological insight.
  • Single-cell omics: Analysis of single-cell datasets to support single-cell level investigations.
  • Tertiary data interpretation: Tertiary analysis and interpretation of complex, large-scale omics data.
  • Biological discovery: Supporting downstream discovery and interpretation in genomics and proteomics research.

Methodology:

Computational steps explicitly include data visualization, analysis, exploration, integration of multiple analytical methods, and support for transitioning raw data to tertiary analysis and biological interpretation.

Topics

Details

Tool Type:
command-line tool, library
Programming Languages:
R
Added:
3/19/2021
Last Updated:
4/11/2021

Operations

Publications

Akhmedov M, Martinelli A, Geiger R, Kwee I. Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data. NAR Genomics and Bioinformatics. 2019;2(1). doi:10.1093/nargab/lqz019. PMID:33575569. PMCID:PMC7671354.

Documentation

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