Omics BioAnalytics
Omics BioAnalytics performs integrative analysis of omics datasets to enable exploratory data analysis, differential expression, and biomarker discovery from datasets with associated demographic variables.
Key Features:
- Multi-Level Characterization: Supports analysis from initial exploratory assessments through in-depth biomarker discovery and multi-level dataset characterization.
- R Shiny Implementation: Implemented using R Shiny for web-based data handling and visualization.
- Amazon Alexa Integration: Integrates with Amazon Alexa.
- Comprehensive Analyses: Performs descriptive analysis of demographic variables, exploratory data analysis, differential expression analysis, and biomarker discovery.
- Data Input Flexibility: Accepts provided sample datasets or user-uploaded omics data with associated demographic variables.
Scientific Applications:
- Biomarker and Biosignature Identification: Identifies biosignatures and discriminative biomarkers related to health and disease processes.
- Hypothesis Generation: Enables comprehensive dataset exploration to generate testable hypotheses about underlying molecular mechanisms.
- Basic and Translational Research Support: Supports investigations in basic biological research and translational medicine.
Methodology:
Performs descriptive analysis of demographic variables, exploratory data analysis, differential expression analysis, and biomarker discovery; implemented using R Shiny and integrated with Amazon Alexa.
Topics
Details
- Tool Type:
- web application
- Programming Languages:
- R, JavaScript, Shell
- Added:
- 1/18/2021
- Last Updated:
- 3/13/2021
Operations
Publications
Singh A, Tebbutt SJ, McManus BM. Omics BioAnalytics: Reproducible Research using R Shiny and Alexa. Unknown Journal. 2020. doi:10.1101/2020.05.05.024323.