Omics BioAnalytics

Omics BioAnalytics performs integrative analysis of omics datasets to enable exploratory data analysis, differential expression, and biomarker discovery from datasets with associated demographic variables.


Key Features:

  • Multi-Level Characterization: Supports analysis from initial exploratory assessments through in-depth biomarker discovery and multi-level dataset characterization.
  • R Shiny Implementation: Implemented using R Shiny for web-based data handling and visualization.
  • Amazon Alexa Integration: Integrates with Amazon Alexa.
  • Comprehensive Analyses: Performs descriptive analysis of demographic variables, exploratory data analysis, differential expression analysis, and biomarker discovery.
  • Data Input Flexibility: Accepts provided sample datasets or user-uploaded omics data with associated demographic variables.

Scientific Applications:

  • Biomarker and Biosignature Identification: Identifies biosignatures and discriminative biomarkers related to health and disease processes.
  • Hypothesis Generation: Enables comprehensive dataset exploration to generate testable hypotheses about underlying molecular mechanisms.
  • Basic and Translational Research Support: Supports investigations in basic biological research and translational medicine.

Methodology:

Performs descriptive analysis of demographic variables, exploratory data analysis, differential expression analysis, and biomarker discovery; implemented using R Shiny and integrated with Amazon Alexa.

Topics

Details

Tool Type:
web application
Programming Languages:
R, JavaScript, Shell
Added:
1/18/2021
Last Updated:
3/13/2021

Operations

Publications

Singh A, Tebbutt SJ, McManus BM. Omics BioAnalytics: Reproducible Research using R Shiny and Alexa. Unknown Journal. 2020. doi:10.1101/2020.05.05.024323.

Links