OMSSAGUI

OMSSAGUI orchestrates configuration and execution of the Open MS Search Algorithm (OMSSA) to integrate OMSSA into informatics processing pipelines for mass spectrometry-driven proteomics.

Key Features:

• OMSSA integration: Interfaces directly with the Open MS Search Algorithm (OMSSA) search engine to run OMSSA searches.
• Configuration and execution: Provides mechanisms to configure and execute OMSSA search parameters and runs.
• Pipeline integration: Functions as a component within informatics processing pipelines for mass spectrometry-driven proteomics.
• Implementation: Implemented in Java.
• Platform support: Supports Windows, Linux, and OSX operating systems.

Scientific Applications:

• Mass spectrometry-driven proteomics: Integration and execution of OMSSA searches within proteomics informatics workflows.
• Proteomics data processing: Configuration and orchestration of OMSSA-based search steps in proteomic analysis pipelines.

Methodology:

Implements configuration and execution of OMSSA searches and integrates OMSSA into informatics processing pipelines; developed in Java.