Ontoclick
Ontoclick annotates highlighted biomedical text with matching ontology terms to support biomedical knowledge curation.
Key Features:
- Ontology annotation: Annotates highlighted text spans with relevant ontology terms from established biomedical ontologies.
- Ontology term suggestion: Automatically suggests candidate ontology terms for highlighted text.
- Curation automation: Automates parts of the manual knowledge curation process to reduce repetitive annotation tasks.
- Biomedical ontology integration: Sources term suggestions from established biomedical ontologies.
Scientific Applications:
- Knowledge curation: Facilitates extraction and annotation of biomedical information from literature for knowledge curation.
- Annotation workflow acceleration: Reduces manual workload in ontology-based annotation of biomedical texts.
Methodology:
When text is highlighted, Ontoclick automatically suggests matching ontology terms from established biomedical ontologies.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- web application
- Programming Languages:
- JavaScript
- Added:
- 10/25/2021
- Last Updated:
- 10/25/2021
Operations
Publications
Xu A, Venkateswaran A, Zhou L, Zankl A. Ontoclick: a web browser extension to facilitate biomedical knowledge curation. Bioinformatics. 2021;38(1):301-302. doi:10.1093/bioinformatics/btab520. PMID:34270699.
PMID: 34270699
Links
Issue tracker
https://github.com/azankl/Ontoclick/issues