OntoTrek
OntoTrek visualizes application ontologies in three-dimensional space to represent ontology class hierarchies and expose term origins across imported ontologies.
Key Features:
- 3D Visualization: Represents ontology class hierarchies in a three-dimensional environment that leverages human stereoscopic vision and spatial awareness to improve perception of hierarchical structure.
- Interactive Exploration: Enables navigation of ontology space with the ability to focus specific terms in the foreground while maintaining contextual relationships within the broader structure.
- Term Origin Identification: Visually codes the origin of ontology terms to trace imported terms back to their source ontologies and reveal inter-ontology reuse.
Scientific Applications:
- Educational Purposes: Facilitate understanding of ontology term hierarchies and relationships for students and researchers.
- Software Development: Support developers integrating ontologies into applications by mapping term relationships and dependencies.
- Curation Efforts: Aid curation teams in managing and updating ontology resources by visualizing the impact of changes within the interconnected network.
- Funding and Project Planning: Inform assessment of the scope and integration of ontological resources to guide resource allocation and development priorities.
Methodology:
Uses a three-dimensional visualization approach to represent ontology class hierarchies and visually codes term origins within 3D space, leveraging human stereoscopic vision and spatial awareness.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript
- Added:
- 2/23/2024
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Named-entity and concept recognition
Publications
Dooley D, Nguyen MH, Hsiao WWL. OntoTrek: 3D visualization of application ontology class hierarchies. PLOS ONE. 2023;18(6):e0286728. doi:10.1371/journal.pone.0286728. PMID:37267413. PMCID:PMC10237395.
PMID: 37267413
PMCID: PMC10237395
Funding: - Genome Canada: 286GET
- Agricultural Research Service: 58-8040-8-014-F
- Natural Sciences and Engineering Research Council of Canada: CGS-M
Documentation
User manual
https://github.com/cidgoh/ontotrek/wikiLinks
Repository
https://github.com/cidgoh/ontotrek