Open Specy
Open Specy classifies and matches spectral data to identify microplastic polymers and support spectral analysis for microplastic pollution research.
Key Features:
- Spectral Processing: Implements smoothing with the Savitzky-Golay filter and polynomial baseline correction using IModPolyFit for preparatory signal processing.
- Identification and Matching: Employs correlation-based matching criteria against an onboard reference library to identify spectra.
- Data Sharing and Reproducibility: Accepts user-contributed spectra into a community library and records session logs to track interactions for reproducibility.
- Community-Driven Growth: Supports expansion of the reference database through community contributions to improve identification coverage and accuracy.
- Comparative Accuracy: Reported evaluations show comparable accuracy to commercial spectral analysis software such as OMNIC Picta and KnowItAll.
Scientific Applications:
- Microplastic Analysis: Identification and classification of microplastic polymers from spectral measurements in environmental research.
- Spectral Data Analysis: General use for analysis and matching of spectral datasets beyond microplastics where comparable spectral identification is required.
Methodology:
Spectral smoothing using the Savitzky-Golay filter, polynomial baseline correction via IModPolyFit, correlation-based matching against a reference library, integration of user-contributed spectra into the library, and session logging for reproducibility.
Topics
Details
- License:
- CC-BY-4.0
- Tool Type:
- library, web application
- Programming Languages:
- R, JavaScript
- Added:
- 11/1/2021
- Last Updated:
- 11/1/2021
Operations
Publications
Cowger W, Steinmetz Z, Gray A, Munno K, Lynch J, Hapich H, Primpke S, De Frond H, Rochman C, Herodotou O. Microplastic Spectral Classification Needs an Open Source Community: Open Specy to the Rescue!. Analytical Chemistry. 2021;93(21):7543-7548. doi:10.1021/acs.analchem.1c00123. PMID:34009953.
PMID: 34009953
Funding: - National Institute of Food and Agriculture: CA-R-ENS-5120-H
- National Oceanic and Atmospheric Administration: NA19NOS990086
- U.S. Department of Agriculture: W4170
Links
Issue tracker
https://github.com/wincowgerDEV/OpenSpecy/issues