OSgc
OSgc evaluates prognostic biomarkers in gastric cancer by integrating gene expression profiling and clinical follow-up data to assess associations between gene expression and patient survival.
Key Features:
- Extensive data integration: Integrates gene expression profiling data with clinical follow-up information from 1,824 gastric cancer cases compiled from seven independent public datasets, including Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA).
- Survival analysis outputs: Generates Kaplan–Meier survival plots and reports hazard ratios (HR) and log-rank p-values for queried genes.
- Multiple survival end points: Supports analysis of overall survival, progression-free survival, progression-free interval, relapse-free survival, and disease-free survival.
- Biomarker scope: Enables assessment of both known and novel prognostic biomarker candidates.
Scientific Applications:
- Prognostic biomarker evaluation: Assess associations between gene expression and patient survival outcomes in gastric cancer cohorts.
- Molecular research: Support investigation of molecular mechanisms linked to prognosis through gene-level survival associations.
- Translational development: Inform development and prioritization of targeted therapies and clinical biomarkers based on prognostic signals.
Methodology:
Integrates gene expression profiling and clinical follow-up from seven public datasets (including GEO and TCGA) covering 1,824 gastric cancer cases and performs Kaplan–Meier survival analyses reporting hazard ratios (HR) and log-rank p-values across five specified survival end points.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 7/26/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Xie L, Wang Q, Yan Z, Han Y, Ma X, Li H, Zhang L, Li X, Guo X. OSgc: A Web Portal to Assess the Performance of Prognostic Biomarkers in Gastric Cancer. Frontiers in Oncology. 2022;12. doi:10.3389/fonc.2022.856988. PMID:35371973. PMCID:PMC8965707.